PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016483048.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 181aa    MW: 20380.5 Da    PI: 10.1222
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016483048.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00044769123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k+F++   L  H  +H
  XP_016483048.1 47 FECKTCNKRFPSFQALGGHRASH 69
                    89**********99999998887 PP

2zf-C2H214.40.0001191113123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg+ Fs    L  H+r+H
  XP_016483048.1  91 HECSICGMEFSLGQALGGHMRRH 113
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.7E-134771IPR007087Zinc finger, C2H2
SuperFamilySSF576673.32E-947113No hitNo description
PROSITE profilePS5015710.1184774IPR007087Zinc finger, C2H2
SMARTSM003550.0754769IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-488114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.11891118IPR007087Zinc finger, C2H2
PfamPF139121.3E-991116IPR007087Zinc finger, C2H2
SMARTSM003550.06791113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MTGIKRSREE DMQVEAEAMA NCALMLLSRL NNNNNATSTD RDYHNDFECK TCNKRFPSFQ  60
ALGGHRASHK RPKLLAGAGE FLVQSKKNKM HECSICGMEF SLGQALGGHM RRHRDEINKT  120
SVAAGNTMIP VARKKMIPVL KKSNSSKRIF CLDLNLSPDE NVDLKLWPTA PVSSPVLRWF  180
F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483048.11e-135PREDICTED: zinc finger protein ZAT12-like
SwissprotQ424101e-37ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLO220856e-92O22085_PETHY; ZPT2-13
STRINGPGSC0003DMT4000401441e-86(Solanum tuberosum)
STRINGPGSC0003DMT4000401431e-86(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.17e-38C2H2 family protein